Well said, you seem to be quite a respectable person RPGlover12. Thats what I like about muslims is they will actualy do the research or at least hear you out before ignoring and dismissing something like the christians do. (a side note I also like the way that muslims view many holidays, or as the priest told me, hollow days

) Looking for the truth, always a good thing. Now, there are many things I would otherwise agree with what you are saying, however there are still counter arguments which in my view nullify the majority of them.
In your first post, there seems only one necessary argument. You mentioned that even science tends to refer to one being, (dubbed mother nature in example) however it does not. It refers to the development that occured over millions of years with millions of different animals/beings passing on their individual new developments to the next generation, be them good or bad, with usualy only the good developments surviving. This continuing event, which will never cease until life as we know it does, is what is being refered.
Now your second post, lets take things one at a time:
1. Again mentioned several times already: Where did god come from? If the universe wasnt an accident, then was god the accident?
2. Correct, thus far everything has depended on its creator to keep it in balance. Computers are a perfect example of this, without somebody keeping them maintained, they will eventualy stop working. However, we are infinitely times more complex than computers, for example, your parents created you right? Well, in your early stages you did depend on them, but eventualy you grew out of those dependencies, and developed your own abilities to keep yourself alive (or at least we hope

). Nobody is to say that eventualy we can't develop computers that fully maintain themselves, even though as of now they are pretty damn simple devices which don't do anything on their own. They are still in the very early stages (only 30 years of existance so far). (remember what I said about going back 200 years and asking how man will fly, same concept)
3. Not sure what to say here, I dont know much about thermodynamics.
4. This can be argued both ways, ties into #1 quite a bit.
5. The scientific laws are ever changing as we understand more

Like for example "What goes up MUST come down". Here in the space age, that theory has been disproven. I have a dish in my back yard aimed at the sky, its gotta be getting that signal from something that refuses to fall. Living tissue could eventualy be intentionaly fabricated, but currently its way beyond our technology. Right now you could extract all of the carbon and protein atoms from any given life form, and it would be non living. Whose to say that if you put them back right where you found them (or rebuild it) then it won't live again? History has shown anything can happen, no matter how bad the odds. There is always that one time when things just fit in perfectly.
6. Until we figure out what the primordial soup consists of, we won't know. I sure don't see religion explaining it. How does man copy himself?
7. Evolution

This argument is against the whole thing, not just part of it. This one doesn't realy belong here.
8. The earth is pretty damn big. Around a decade ago, there was an archaelogical dig off of the pacific coast where a drill went about 2 miles beneath the ocean floor, during just that one dig, there were several new fossils discovered of previously unseen animal species, which bore resemblence to already known ones. That is just a fraction of whats beneath the surface, in 100 years we havent even begun to scratch for whats realy down there. We possibly haven't even seen everything that still lives today, nobody has seen how far deep the ocean floor even goes, let alone whats buried underneath it.
9. I would argue that evolution does not require changes to be gradual, but I am not an expert. That said, my only argument here is that evolution isn't fully proven yet. Even though its not fully proven, its very concrete thus far. Eventualy as more is understood, this will more than likely be fully explainable. Bear in mind we are a lot further than we were 200 years ago, how far will we be in 200 years from now as more discoveries are made?
10. More research needs to be done to find out how meiosis first came about. That ties into finding out what the primordial soup consisted of. As for the sexual vs asexual reproduction, asexualy reproducing organisms don't invoke much change in their offspring. Since sexualy reproducing life forms share and discard different changes, they have the best chance at inheriting an innovative trait which gives them an advantage that other life forms don't have. Easily compared to modern days. Which company better stands out in capitalism? The one who produces pretty much the same old stuff over and over again, or the company that constantly innovates and creates new and origional products?
11. Again, evolution. One day an organism could have developed the ability to thrive off light energy from sitting still in a god spot. Through many generations it became the plant.
12. This one doesn't need an explanation that I haven't already said once.
13. tsk tsk tsk...big flaw here

computer software (.... nay ... emulators

) more than often begin in incomplete beta stages. With each release more and more features are added until it does what the author intended it to do (where it may stand one day). But yet still the author periodicaly decides that he wants to add more stuff, and fix more flaws, because either he is not satisfied with his work, or a competing work is doing a better job. He adds more stuff to his software continuously (evolution) until competing software totaly outdoes his and he ultimately discontinues it, or motivation to continue it is lost (natural selection).
An organism (such as an eye) may start as the simple ability to sense photons, because when photons are around, food might also be around. Eventualy over time that ability to sense photons becomes more complex.
14. I am not sure how this argues against evolution, if anything it shows that life forms do change. Perhapse its just more practical to start as a pupa and end up as a butterfly, so the species survived that way, just as its more practical for a mother to have a baby in her womb than a full grown person.
15. Ill tell you what, go ask the CIA if you can have a sample of their best encrypted signal, and tell me how easily you can decipher it. I promise you that it will take a lifetime of work. Nevertheless its basicaly a simple mechanical structure right? Its only been in development for about 100 years or so. Evolution has been in development for aeons.
16. Obviously god is too complex for us to understand, so who designed god? Again, ties into #1