I found a solution to my problem that should work. You might want to direct people who complain about some textures not loading here.
For all of you who are having problems with certain textures not loading!
First, you have to have everything set up right. See this tutorial for details:
http://www.classicgaming.com/bayoudejital/ds/temp/celzelda.html
Second,
make sure that you guys have the latest version of Rice's Plugin and BMGlib.dll (
not BMGlibPNG.dll). They can be downloaded
here and
here.
Now make sure that in your settings or "change plug-ins" (in either PJ64 or 1964) says(for your video plugin)
Rice's Video Plugin 6.1.1 beta 10.
Now, go into your graphic settings and do all of the settings as seen in the video tutorial above, but also make sure your Render Engine (in the general options tab) says OpenGL (be warned... it might run very slowly and at around 10 fps for the first minute or so).
And everything should load perfectly... FOR SURE.