This is a cheat question so i am moving to PJ64 Cheats Board.
Ok now what has happened is:
You have done a Quick Save (F5) & then loaded a Quick Load (F7)
This also being known as a PJ Save.
Anyway this will resolved the problem.
Open the cheat menu & then go to the Have\Debug Mode.
Now right click & Edit.
you will now see this Edit Dialogue appear
(Codes shown below are for the (U) [!] Version)
Change the A032D598 0001 to A032D598 00??
& another "Options" Box will open
write in there
01 On
00 Off
like the picture below shows & Click Update Cheats
that will close the Edit Dialouge leaving the main Cheats Menu still open.
Now open the Have\Debug Mode
(Double click to open the Options) Put it on "Off" & Then F7 to start the game.
Once its off, untick the cheat & F5 (save)