Perfect Dark: Jabo's Direct 3D6 1.5.1, Jabo's Direct Sound 1.5
Both Zeldas: Jabo's Direct 3D6 1.5.1, Azimer's HLE v.0.55.1 Alpha.
My system is different than yours but these settings should work for you though I'm not sure what speeds you'll get.
I've attached a list of recommended plugins for most N64 games. I've been using it as a guide in setting up my own. Not sure how up to date it is but it's worked fine so far. Hope it helps. Credit to the author Bighead.
You can use the subscreen delay cheat to fix that issue (right click game in rom browser, cheat codes, then select the fix), otherwise the Water Temple becomes a pain in the ass when you want to switch boots.
You can use the subscreen delay cheat to fix that issue (right click game in rom browser, cheat codes, then select the fix), otherwise the Water Temple becomes a pain in the ass when you want to switch boots.