To avoid confusion author NDS has changed the name of his build to NDeSmuME (makes use of his name)
the version as he is calling it is I think 0.3.6 but he's been on about 0.4.0 or something but anyway he's re-released the emulator along with the source so that it follows the requirements of the GPL License.
Here are the Links.....
Perhaps Normmatt could have a look at these and make some use of them??